This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001JHAT.1

India/LOC_001JHAT.1/2025-09-19
G. R. Dwivedi, S. P. Behera, R. Kumar, N. Singh, S. Rajput, R. Singh, I. Fatma & A. Tiwari

ICMR-Regional Medical Research Centre, Gorakhpur, Virology Unit

Sample details

Collection date
2025-09-19
Earliest release date
2026-08-18
Sampling location
India
Isolate name
11072

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2026-08-18
NCBI update date
2026-08-18
INSDC accession

Host

Host

Submission details

Submission ID
PX940534.1
Submitting group
Date submitted
2026-08-24 13:52:07 UTC
Date released
2026-08-24 14:03:13 UTC

Clade

Clade CV-A16
B1c

Genotype

Genotype
CV-A16

Alignment and QC

Total SNPs
43
Total deleted nucs
26
Length
420 (6.02%)

Nucleotide mutations

Mutations called relative to the U05876.1 reference

Substitutions
  • C96T
  • C97G
  • C99A
  • A105G
  • G137A
  • T138G
  • C142T
  • A143G
  • G150A
  • A154G
  • C159T
  • T162C
  • G174A
  • T184A
  • C194T
  • G224A
  • C236T
  • C242T
Deletions
106-131
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the U05876.1 reference

Substitutions
N/A
Deletions
N/A
Insertions
N/A

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